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Dima Kozakov

Stony Brook University

    20052026

    Research activity per year

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    • A Customizable Antibody Delivery Strategy Using Fc-Affinity Ligands

      Isaacs-Bernal, D., Bahsoun, N. E., Huo, L., Poda, G., Kozakov, D. & Shoichet, M. S., Apr 13 2026, In: ACS Biomaterials Science and Engineering. 12, 4, p. 2228-2242 15 p.

      Stony Brook University

      Research output: Contribution to journal › Article › peer-review

    • Bias in the AlphaFold3 prediction of ligand-induced domain motion in enzymes

      Yu, H., Bekar-Cesaretli, A. A., Lazou, M., Kozakov, D., Joseph-McCarthy, D. & Vajda, S., Mar 10 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 10, e2530709123.

      Stony Brook University

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2

      Herasymenko, O., Silva, M., Correy, G. J., Abu-Saleh, A. A. A. A., Ackloo, S., Arrowsmith, C., Ashworth, A., Ban, F., Beck, H., Bishop, K. P., Bohórquez, H. J., Bolotokova, A., Breznik, M., Chau, I., Chen, Y., Cherkasov, A., Dehaen, W., Della Corte, D., Denzinger, K. & Doering, N. P. & 63 others, Edfeldt, K., Edwards, A., Fayne, D., Gentile, F., Gibson, E., Gokdemir, O., Gunnarsson, A., Günther, J., Irwin, J. J., Jensen, J. H., Harding, R. J., Hillisch, A., Hoffer, L., Hogner, A., Hutchinson, A., Kandwal, S., Karlova, A., Koirala, K., Kotelnikov, S., Kozakov, D., Lee, J., Lee, S., Lessel, U., Liu, S., Liu, X., Loppnau, P., Meiler, J., Moretti, R., Moroz, Y. S., Muvva, C., Oprea, T. I., Paige, B., Pandit, A., Park, K., Poda, G., Protopopov, M. V., Pütter, V., Ravichandran, R., Rognan, D., Rosta, E., Sabnis, Y., Scott, T., Seitova, A., Sharma, P., Sindt, F., Song, M., Steinmann, C., Stevens, R., Talagayev, V., Tararina, V. V., Tarkhanova, O., Tingey, D., Trant, J. F., Treleaven, D., Tropsha, A., Walters, P., Wells, J., Westermaier, Y., Wolber, G., Wortmann, L., Zheng, S., Fraser, J. S. & Schapira, M., Feb 9 2026, In: Journal of Chemical Information and Modeling. 66, 3, p. 1566-1581 16 p.

      Stony Brook University

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations

    • From memorization to generalization: Why physics will improve machine learning -based prediction of protein complexes

      Glukhov, E., Vajda, S. & Kozakov, D., Jun 2026, In: Current Opinion in Structural Biology. 98, 103288.

      Stony Brook University

      Research output: Contribution to journal › Article › peer-review

    • Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16

      Ashizawa, R., Kotelnikov, S., Khan, O., Li, S. X., Glukhov, E., Cao, X., Lazou, M., Bekar-Cesaretli, A., Hailegeorgis, D., Averkava, V., Zhu, Y., Jones, G., Yu, H., Kalitin, D., Stepanenko, D., Koirala, K., Patsahan, T., Beglov, D., Lukin, M. & Joseph-McCarthy, D. & 7 others, Simmerling, C., Tropsha, A., Coutsias, E., Dill, K. A., Padhorny, D., Vajda, S. & Kozakov, D., Jan 2026, In: Proteins: Structure, Function and Bioinformatics. 94, 1, p. 183-191 9 p.

      Stony Brook University

      Research output: Contribution to journal › Article › peer-review

      Open Access
      12 Scopus citations
    View all 151 Research outputs