Grants & Projects per year
Personal profile
Research interests
My research investigates the behavior and fate of pathogens in engineered systems and their implications for public health. Our labs optimize purification processes to concentrate and extract biological contaminants from complex envionmental matrix, develop proteomic assays to understand virus inactivation mechanisms, and leverage genomic sequencing and AI tools to discover emerging biological contaminants or health-relevant biomarkers.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Hiding in plain sight: integrating AI with targeted bench methods to discover and characterize viruses in the human body
Kauffman, A. K. (PI), Qu, J. (CoI) & Ye, Y. (CoI)
National Institute of Dental & Craniofacial Res
03/13/26 → 01/31/30
Project: Research
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C19: Wastewater Monitoring of SARS-CoV-2 and Variants of Concern in Erie County
Bradley, I. (PI) & Ye, Y. (CoI)
01/1/22 → 07/31/22
Project: Research
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C19: Wastewater Monitoring of SARS-CoV-2 and Variants of Concern in Erie County
Bradley, I. (PI) & Ye, Y. (CoI)
06/8/21 → 12/31/21
Project: Research
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A 1-year study on SARS-CoV-2 variant shifts in wastewater using dPCR: comparison with clinical and GISAID data
Mosavi, S. M. R., Acer, P., Andersen, P., Barbero, R., Barksdale, S., Bellakbira, S., Bunde, D., Dunlap, R., Erickson, J., Goldfarb, D., Jones-Roe, T., Kilroy, M., Le, H., Lepene, B., Milich, E., Mohamed, A., Munns, D., Obermeyer, J., Patnaik, A. & Pricer, G. & 43 others, , Nov 18 2025, In: mSystems. 10, 11, p. 1-16 16 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Flow configuration shapes microbiome assembly and function in full-scale drinking water BAC filters
Wang, H., Jiang, K., Yang, J., Hu, Y., Rui, M., Wang, Y. & Ye, Y., Dec 1 2025, In: Water Research X. 29, 100411.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Reactivity of Viral Proteins with Free Chlorine: Structural Insights and Implications for Virus Inactivation
Zhu, C. & Ye, Y., Aug 19 2025, In: Environmental Science and Technology. 59, 32, p. 17188-17197 10 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Recovering wastewater RNA for virome sequencing by systematically optimized tangential-flow ultrafiltration and Nanotrap microbiome particles
Segelhurst, E., Bard, J. E., Gallo, S., Huang, V., Pohlman, A., Yergeau, D. A., Surtees, J. A., Bradley, I. M. & Ye, Y., Oct 2025, In: Applied and Environmental Microbiology. 91, 10Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Electro-Fenton and Induced Electro-Fenton as Versatile Wastewater Treatment Processes for Decontamination and Nutrient Removal without Byproduct Formation
Quispe Cardenas, L. E., Deptula, P. J., Huerta, C. S., Zhu, C., Ye, Y., Wang, S. & Yang, Y., Oct 13 2023, In: ACS ES and T Engineering. 3, 10, p. 1547-1556 10 p.Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations