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Enzyme- or light-triggered cyclopropenes for bioorthogonal ligation

  • Stony Brook University

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

8 Scopus citations

Abstract

Since first reported at the beginning of the 21st century, bioorthogonal reactions have become powerful tools for investigating biological systems. Here, we review several classic and current bioorthogonal reactions, including the Staudinger-Bertozzi ligation, strain-promoted azide-alkyne cycloaddition (SPAAC), 1,3-dipolar cycloaddition, and tetrazine-alkene ligation. We discuss the capabilities and limitations of the subset of current bioorthogonal reactions that can be “turned on” by exposure to light or an enzyme. Finally, we focus on our recently developed turn-on cyclopropenes, which can be activated for reaction with tetrazines by exposure to light or enzymes, like nitroreductase, depending on the modular reaction caging group appended to the cyclopropene. We discuss the caged cyclopropene's molecular design and synthesis, and we discuss experiments to evaluate and verify reactivity both in vitro and in vivo.

Original languageEnglish
Title of host publicationChemical Tools for Imaging, Manipulating, and Tracking Biological Systems
Subtitle of host publicationDiverse Chemical, Optical and Bioorthogonal Methods
EditorsDavid M. Chenoweth
PublisherAcademic Press Inc.
Pages1-34
Number of pages34
ISBN (Print)9780128211564
DOIs
StatePublished - 2020

Publication series

NameMethods in Enzymology
Volume641

Keywords

  • 1,3-Dipolar cycloaddition
  • Azide
  • BODIPY
  • Bioorthogonal reactions
  • Caged cyclopropenes
  • Coumarin
  • Cyclooctyne
  • Cyclopropene
  • Enzyme-triggered bioorthogonal reactions
  • Fluorogenic probes
  • Light-triggered bioorthogonal reactions
  • Nitroreductase
  • Staudinger-Bertozzi ligation
  • Tetrazine

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