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GFT NMR experiments for polypeptide backbone and 13Cβ chemical shift assignment

  • SUNY Buffalo
  • Rutgers - The State University of New Jersey, New Brunswick

Research output: Contribution to journalArticlepeer-review

42 Scopus citations

Abstract

(4,3)D, (5,3)D and (5,2)D GFT triple resonance NMR experiments are presented for polypeptide backbone and 13Cβ resonance assignment of 15N/13 labeled proteins. The joint sampling of m = 2, 3 or 4 indirect chemical shift evolution periods of 4D and 5D NMR experiments yields the measurement of 2m - 1 linear combinations of shifts. To obtain sequential assignments, these are matched in corresponding experiments delineating either intra or interresidue correlations. Hence, an increased set of matches is registered when compared to conventional approaches, and the 4D or 5D information allows one to efficiently break chemical shift degeneracy. Moreover, comparison of single-quantum chemical shifts obtained after a least squares fit using either the intra or the interresidue data demonstrates that GFT NMR warrants highly accurate shift measurements. The new features of GFT NMR based resonance assignment strategies promise to be of particular value for establishing automated protocols.

Original languageEnglish
Pages (from-to)117-130
Number of pages14
JournalJournal of Biomolecular NMR
Volume28
Issue number2
DOIs
StatePublished - Feb 2004

Keywords

  • Automated protein NMR assignment
  • GFT NMR spectroscopy
  • High throughput
  • Protein structure
  • Structural genomics

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