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The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

  • GIGA Community of Scientists
  • Nova Southeastern University
  • Florida International University
  • Smithsonian Institution
  • George Washington University
  • Ocean Genome Legacy
  • Brown University
  • Harvard University
  • Monterey Bay Aquarium Research Institute
  • University of Florida
  • Pennsylvania State University
  • The Dobzhansky Center for Genome Bioinformatics
  • Rice University
  • King Abdullah University of Science and Technology
  • University of California at San Diego
  • Sars International Centre for Marine Molecular Biology
  • Texas A&M University at Galveston
  • Ludwig Maximilian University of Munich
  • Roscoff Marine Lab
  • University of Miami
  • Max Planck Institute for Dynamics and Self-Organization
  • University of California Merced
  • Iowa State University
  • University of California at Santa Barbara
  • Florida Atlantic University
  • Texas A&M University-Corpus Christi
  • Auburn University
  • Okinawa Institute of Science and Technology Graduate University
  • Ghent University
  • The University of Chicago
  • Virginia Museum of Natural History
  • BGI-Shenzhen

Research output: Contribution to journalReview articlepeer-review

82 Scopus citations

Abstract

Over 95% of all metazoan (animal) species comprise the "invertebrates, " but very few genomes from these organisms have been sequenced. We have, therefore, formed a "Global Invertebrate Genomics Alliance" (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site (http://giga.nova.edu) has been launched to facilitate this collaborative venture.

Original languageEnglish
Pages (from-to)1-18
Number of pages18
JournalJournal of Heredity
Volume105
Issue number1
DOIs
StatePublished - Jan 1 2014

Keywords

  • GIGA
  • biodiversity
  • comparative genomics
  • consortium
  • evolution
  • invertebrates
  • metazoa

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